Skinny Pumpkin Quinoa Muffins are the perfect blend of health and convenience. These muffins not only make for a hearty breakfast but are also great for snacking anytime during the day. They are packed with nutritious ingredients like quinoa and pumpkin, making them a standout choice for various occasions, from brunch to an afternoon pick-me-up.
Why You’ll Love This Recipe
- Healthy Ingredients: Packed with wholesome ingredients like quinoa and pumpkin, these muffins provide essential nutrients without compromising on taste.
- Easy to Make: The simple instructions ensure that anyone can whip these up in no time, making them perfect for busy mornings.
- Versatile Flavor: With hints of warming spices like cinnamon and nutmeg, these muffins are delightful any time of year, especially in the fall.
- Portable Snack: Perfect for on-the-go breakfasts or snacks, these muffins fit easily into a bag and can be enjoyed anywhere.
- Low Sugar Option: Sweetened naturally with banana and maple syrup, they offer a guilt-free treat option.
Tools and Preparation
To make your baking experience smooth and enjoyable, having the right tools is essential.
Essential Tools and Equipment
- Muffin tin
- Mixing bowls
- Whisk
- Measuring cups
- Baking spatula
Importance of Each Tool
- Muffin tin: A good quality muffin tin ensures even baking and perfectly shaped muffins that pop out easily.
- Mixing bowls: Having multiple mixing bowls allows you to separate wet and dry ingredients effectively, ensuring a well-combined batter.
- Whisk: A whisk is crucial for thoroughly blending ingredients together, creating a light and airy batter.

Ingredients
Here’s what you’ll need to make these delicious Skinny Pumpkin Quinoa Muffins:
Wet Ingredients
- 1 tablespoon flaxseed meal
- 3 tablespoons water
- 1/2 cup mashed banana (1 large, 2 small)
- 3/4 cup pumpkin puree
- 1/4 cup non-dairy milk
- 1/4 cup maple syrup
Dry Ingredients
- 1 1/4 cup oat flour (oats ground in a blender)
- 1/2 cup quinoa flakes
- 1/2 cup blanched almond flour
- 1/4 cup coconut sugar
- 2 teaspoons baking powder
- 1 teaspoon cinnamon
- 1/2 teaspoon vanilla bean powder (or 1 teaspoon extract)
- 1/2 teaspoon nutmeg
- 1/4 teaspoon ginger
- 1/4 teaspoon salt
How to Make Skinny Pumpkin Quinoa Muffins
Step 1: Preheat the Oven
Heat your oven to 350ºF. Grease a 12-cup muffin tin lightly with oil or cooking spray.
Step 2: Prepare the Flax Egg
Combine the flaxseed meal with water in a small bowl. Set aside to gel while you prepare the other ingredients.
Step 3: Mix Dry Ingredients
In a large mixing bowl, whisk together all dry ingredients except for vanilla extract if you’re using it. Ensure everything is well combined to prevent clumping.
Step 4: Combine Wet Ingredients
In another bowl, beat together the mashed banana, pumpkin puree, non-dairy milk, and maple syrup until smooth. Whisk in the flax egg until fully incorporated.
Step 5: Combine Wet and Dry Mixtures
Pour the wet mixture into the dry ingredients. Stir gently until just combined. The batter will be thick yet stirable.
Step 6: Fill Muffin Cups
Fill each muffin cup about three-quarters full. If there are any unused cups in the tin, fill them with water to avoid burning.
Step 7: Add Toppings (Optional)
Sprinkle pumpkin seeds or quinoa flakes on top of each muffin if desired for added texture.
Step 8: Bake the Muffins
Bake on the center rack for about 23-25 minutes or until a cake tester comes out clean when inserted into the center of a muffin.
Step 9: Cool Down
Let them cool in the pan for about five minutes before transferring them to a wire rack to cool completely. If you like warm muffins, reheat them in a toaster oven or microwave before serving.
How to Serve Skinny Pumpkin Quinoa Muffins
Skinny Pumpkin Quinoa Muffins are delightful on their own, but they can be enhanced with various toppings or pairings. Here are some creative ways to serve them.
With Nut Butter
- Almond butter – Spread a layer of creamy almond butter for added richness and protein.
- Peanut butter – A classic choice that pairs perfectly with the sweetness of pumpkin.
Topped with Greek Yogurt
- Plain Greek yogurt – A dollop of tangy Greek yogurt adds creaminess and a protein boost.
- Flavored yogurt – Try vanilla or pumpkin-flavored yogurt to complement the muffins.
As Part of a Breakfast Bowl
- Fruit salad – Serve alongside a fresh fruit salad for a refreshing contrast.
- Oatmeal – Pair with a warm bowl of oatmeal for a hearty breakfast.
Drizzled with Honey or Maple Syrup
- Honey drizzle – A light drizzle enhances sweetness without overpowering the flavor.
- Maple syrup – For those who love extra sweetness, add a splash of maple syrup on top.
How to Perfect Skinny Pumpkin Quinoa Muffins
Achieving the perfect muffin texture and flavor is key. Here are some tips to ensure your Skinny Pumpkin Quinoa Muffins turn out amazing every time.
- Use fresh ingredients – Fresh pumpkin puree and ripe bananas enhance the overall taste.
- Measure accurately – Use precise measurements for your dry ingredients to maintain proper texture.
- Don’t overmix – Mix just until combined; overmixing can lead to dense muffins.
- Check doneness – Use a toothpick; if it comes out clean, your muffins are ready!
- Cool properly – Allow them to cool in the pan briefly before transferring to a wire rack for even cooling.
Best Side Dishes for Skinny Pumpkin Quinoa Muffins
To create a well-rounded meal, consider serving these muffins with complementary side dishes. Here are some great options:
- Fresh Fruit Salad – A mix of seasonal fruits adds brightness and freshness.
- Yogurt Parfait – Layer your favorite yogurt with granola and berries for added texture.
- Smoothie Bowl – A thick smoothie topped with nuts and seeds makes for a nutritious side.
- Chia Seed Pudding – This creamy pudding provides fiber and pairs well with muffins.
- Savory Oatmeal – Enhance your meal with oatmeal topped with herbs or cheese for contrast.
- Vegetable Sticks and Hummus – Crunchy veggies provide a healthy crunch alongside sweet muffins.
Common Mistakes to Avoid
When making Skinny Pumpkin Quinoa Muffins, small missteps can lead to less-than-perfect results. Here are some common mistakes and how to avoid them.
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Bold Measurement Errors: Always measure your ingredients accurately. Using too much flour or too little liquid can result in dry or dense muffins.
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Bold Ignoring the Flax Egg: The flaxseed meal needs time to gel with water. Don’t skip this step, as it helps bind the ingredients together.
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Bold Overmixing the Batter: Mix just until combined. Overmixing can make the muffins tough instead of light and fluffy.
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Bold Skipping the Toppings: Adding a sprinkle of pumpkin seeds or quinoa flakes on top adds flavor and texture. Don’t overlook this final touch!
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Bold Not Checking for Doneness: Ovens vary, so check your muffins a few minutes before the suggested baking time. A toothpick should come out clean when they are done.

Storage & Reheating Instructions
Refrigerator Storage
- Store in an airtight container for up to 5 days.
- Place parchment paper between layers if stacking to prevent sticking.
Freezing Skinny Pumpkin Quinoa Muffins
- Wrap each muffin tightly in plastic wrap or aluminum foil.
- Freeze for up to 3 months for optimal freshness.
Reheating Skinny Pumpkin Quinoa Muffins
- Oven: Preheat to 350ºF, then warm muffins for about 10-15 minutes until heated through.
- Microwave: Heat one muffin at a time for about 15-20 seconds until warm.
- Stovetop: Use a skillet on low heat, cover with a lid, and warm for about 5 minutes.
Frequently Asked Questions
Here are some common questions about preparing and enjoying Skinny Pumpkin Quinoa Muffins.
Can I substitute other flours in this recipe?
Yes, you can use gluten-free all-purpose flour or whole wheat flour instead of oat flour. Adjust moisture as needed.
How can I customize my Skinny Pumpkin Quinoa Muffins?
Feel free to add nuts, chocolate chips, or dried fruits for extra flavor and texture!
Are these muffins suitable for meal prep?
Absolutely! These muffins store well and can be made ahead of time for quick breakfasts during the week.
How do I ensure my muffins rise properly?
Make sure your baking powder is fresh and avoid overmixing the batter to keep it light and airy.
Can I use canned pumpkin puree?
Yes, canned pumpkin puree works perfectly! Just make sure it’s pure pumpkin without added spices or sweeteners.
Final Thoughts
Skinny Pumpkin Quinoa Muffins are not only delicious but also versatile. They make a perfect snack or breakfast option that you can customize with your favorite add-ins. Try this recipe today and enjoy the delightful flavors of fall while nourishing your body!
Skinny Pumpkin Quinoa Muffins
Skinny Pumpkin Quinoa Muffins are a deliciously healthy treat that beautifully combines the flavors of autumn with the nutrition of superfoods. These muffins are perfect for breakfast, a midday snack, or even dessert. Made with wholesome ingredients like quinoa, pumpkin puree, and ripe bananas, they offer a satisfying texture and natural sweetness without excess sugar. The warming spices of cinnamon and nutmeg create an inviting aroma that fills your kitchen while baking. Easy to prepare and portable, these muffins can be enjoyed anywhere, making them an ideal choice for busy lifestyles. Plus, they’re naturally sweetened with maple syrup and banana, giving you a guilt-free indulgence that’s both nutritious and delightful.
- Prep Time: 15 minutes
- Cook Time: 25 minutes
- Total Time: 40 minutes
- Yield: 12 servings 1x
- Category: Snack
- Method: Baking
- Cuisine: American
Ingredients
- 1 tablespoon flaxseed meal
- 3 tablespoons water
- 1/2 cup mashed banana (1 large, 2 small)
- 3/4 cup pumpkin puree
- 1/4 cup non-dairy milk
- 1/4 cup maple syrup
- 1 1/4 cup oat flour
- 1/2 cup quinoa flakes
- 1/2 cup blanched almond flour
- 1/4 cup coconut sugar
- 2 teaspoons baking powder
- 1 teaspoon cinnamon
- 1/2 teaspoon vanilla bean powder (or 1 teaspoon extract)
- 1/2 teaspoon nutmeg
- 1/4 teaspoon ginger
- 1/4 teaspoon salt
Instructions
- Preheat the oven to 350ºF and grease a muffin tin.
- Combine flaxseed meal with water in a small bowl; set aside to gel.
- In a large bowl, whisk together dry ingredients except vanilla extract.
- In another bowl, mix mashed banana, pumpkin puree, non-dairy milk, and maple syrup until smooth; add flax egg.
- Pour wet mixture into dry ingredients; stir until just combined.
- Fill muffin cups three-quarters full; sprinkle toppings if desired.
- Bake for 23-25 minutes until a toothpick comes out clean.
- Let cool before enjoying.
Nutrition
- Serving Size: 1 muffin (66g)
- Calories: 122
- Sugar: 6g
- Sodium: 55mg
- Fat: 4g
- Saturated Fat: 0.4g
- Unsaturated Fat: 3.6g
- Trans Fat: 0g
- Carbohydrates: 21g
- Fiber: 3g
- Protein: 3g
- Cholesterol: 0mg
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